- Switched Opal service urls from sccne.wustl.edu to NBCR.
- Added more JMol controls for visualization, JMol code and applets provided by Bob Hanson.
- Changed default forcefield to PARSE in web interface.
- Fixed crash when opal returns an error.
- Fixed specific combinations of command-line arguments causing pdb2pqr.py to crash.
- Fixed opal job failing when filenames have spaces or dashs.
- Fixed gap in backbone causing irrationally placed hydrogens.
- Fixed crash when too many fixes are needed when setting termini.
- Corrected web and command line error handling in many cases.
- Fixed --username command line option.
- Fixed ambiguous user created forcefield and name handling. Now --username is required if --userff is used.
- Fixed querystatus.py not redirecting to generated error page.