What is here?
This website serves the following software packages for biomolecular modeling, solvation, and electrostatics. - APBS (Adaptive Poisson-Boltzmann Solver): software for evaluating the electrostatic properties of nanoscale biomolecular systems
- PDB2PQR: an automated pipeline for the setup, execution, and analysis of Poisson-Boltzmann electrostatics calculations
What does it do?We offer tutorials and background material for users interested in learning more about applying this software to their biomolecular modeling problem. The following Wordle image summarizes the titles and abstracts from over 1700 papers that have cited APBS and PDB2PQR. What is new?
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PDB2PQR 1.8 released
We are pleased to announce the release of PBD2PQR 1.8. This version includes support for the new PROPKA 3.0 pKa software, several improvements to the command line extensions functionality, as well as improvements to the PDB2PQR web server. A full list of changes is available in the release history page.As usual, PDB2PQR can be run through the web or downloaded for use on your computer. Access to both the web server and the downloadable software is available at http://www.poissonboltzmann.org/pdb2pqr/d.Thank you for your continuing support of PDB2PQR.Sincerely,The PDB2PQR Development Team
Posted Jan 26, 2012, 5:06 AM by Nathan Baker
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New APBS 1.3 Windows Installer
We have released a new version of the APBS Windows Installer with the following features:Ability to customize install path with correct behaviorInteractive command line interface when double-clicking APBS programThe new installer can be obtained through our downloads page. Please let us know if you have any questions or concerns about this new installer.Thank you for your support of APBS.
Posted Jan 4, 2012, 8:24 AM by Nathan Baker
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An update on mailing lists
Dear APBS users --
My apologies for the repeated posts on this subject but I
wanted to update you on our troubled transition of the mailing lists to Google
Groups.
Unfortunately, it appears that many users have restricted
access to Google Groups because of firewalls set by their countries and/or
organizations. Therefore, we will
continue to host and archive the lists at two sites:
APBS-USERS can be accessed at https://lists.sourceforge.net/lists/listinfo/apbs-users
or https://groups.google.com/forum/#!forum/apbs-usersAPBS-ANNOUNCEMENTS can be accessed at https://lists.sourceforge.net/lists/listinfo/apbs-announce
or https://groups.google.com/forum/#!forum/apbs-announcements
Messages posted to one list will be cross-posted to ...
Posted Sep 21, 2011, 7:55 AM by Nathan Baker
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The APBS mailing lists have moved to Google Groups
In response to several requests we've received for more user-friendly mailing lists that are easier to post, browse, and search, we have moved the APBS mailing lists to Google Groups.The low-traffic APBS-ANNOUNCE mailing list has moved to https://groups.google.com/forum/#!forum/apbs-announcements and the moderate traffic APBS-USERS mailing list has moved to https://groups.google.com/forum/#!forum/apbs-users. We will be moving users to the new mailing lists during the month of September 2011.
Posted Sep 9, 2011, 8:01 AM by Nathan Baker
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PDB2PQR 1.7.1 released
Dear PDB2PQR users --
We are pleased to announce the release of PDB2PQR 1.7.1. This
release contains several new features and bug fixes which are described in
detail at http://goo.gl/w0BxD. Among these
changes are several important features which should be of broad interest to the
community.
The primary URL
for APBS Opal support has changed to leverage services provided by the
National Biomedical Computation Resource (http://nbcr.net/). This
provides additional computational resources to users who are interested in
running calculations on remote resources.
Added more JMol
controls for visualization.
Improved error
reporting.
Fixed many bugs
in both the command line and web version.
Improved
behavior of –userff and –usernames command line switches for user created ...
Posted Aug 6, 2011, 7:26 PM by Nathan Baker
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